nanoStructures and bioSystems at Surfaces

Research

 

Metalloproteins

 

The acitvity consists in the study of the electron transfer properties of metalloproteins of different kinds (e.g. blue-copper, heme metalloproteins) at the level of the single molecule by means of scanning probe microscopy.
Particularly, we investigate the electron transfer reaction of molecules chemisorbed onto atomically flat electrodes (e.g. Au(111)) taking advantage of potentiostatic control of the reaction and using electrochemical scanning tunneling microscope as a nanoprobe.
This approach helps us to elucidate the nature of the tunneling current arising from single redox proteins upon tuning the substrate potential to the unoccupied molecular levels. Furthermore, it provides a unique tool to figure out the most suitable molecules to be used in Biomolecular Electronics applications.

The representation of the X-ray structure of azurin from Pseudomonas aeruginosa. This blue-copper protein binds to gold via a surface disulfide bridge (Cys3Cys26).
Schematic set-up of the electrochemical scanning tunneling microscope and energy diagram for the molecular adsorbate spectroscopy.
 
Comparative ECSTM and ECAFM imaging of a sample of azurins on Au(111) imaged as a function of Vs (vs SCE). The results point out the electronic nature of the features visible by STM (bright spots appears only above -125 mV) [Ultramicroscopy 89 (2001) 291].
ECAFM
ECSTM

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Biomolecular Electronics

 

Metalloproteins are used in this research activity as active elements of hybrid nanoelectronic devices. By exploiting both their redox properties and, when possible, chemisorption capabilities onto metal leads, single to few molecules biomolecular devices can be implemented.
Particularly, in single protein transistors, a gate voltage swithches the current flow through a metalloprotein immobilized in a ~ 5 nm gap (made by state of the art electron beam lithography) by varying the alignement of the unoccupied molecular levels to the Fermi level of the leads.

In case of larger gaps (10 - 80 nm), a protein (sub)monolayer is placed in between the leads by suitable chemical functionalization of the device surface (usually SiO2).

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DNA

 

Plasmid DNA and mitochondrial DNA (mtDNA) have been studied. MtDNA was purified from homogenised rat liver. Our interest was to assess the damage induced by tert-butylhydroperoxide on mtDNA. Protocols for producing high quality images of DNA deposited on mica were developed.

Follows the links below to see the images and a brief description of the research:

 

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Surface Conditioning

Surface functionalization and pattering is another fundamental issue for assembling monolayers of functional biomolecules right in the place we want (e.g. in between two planar nanoelectrodes).
We develop approaches for immobilizing different biomolecules onto surfaces of different nature (Au, SiO2, mica, glass, metal and semiconductor oxides, etc.) exploiting a number of different functional groups on the protein surface (SH, SS, NH2, etc.). These methods can be of general applicability or tailored on the specific molecule and molecular arrangement we want to obtain.
The use of optical and non conventional dip-pen lithography (based on AFM) endows the developed methods with spatial resolution (down to 100 nm).

The schematic reaction used for immobilizing proteins on oxygen exposing surfaces. The method exploits surface protein amines to form a covalent link with the silane + glutharic dialdheyde layer [Surf. Sci. 504 (2002) 282].
Example of a protein (azurin) monolayer assembled by the aforementioned method.

Example of AFM dip-pen lithography. A square area (1 µm) of mica has been functionalized with a 3-aminopropylthriethoxysilane monolayer transferred by the AFM tip. By properly tuning the scanning speed and the load applied to the cantilever it is possible to write and read with the same tip which has been previously coated with the desired molecules.

 

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Cells at Surfaces

We are moving to the investigation of mechanical properties of living cells. The main tool we plan to exploit is Atomic Force Microscopy (AFM) implemented in the Force Spectroscopy approach (Force Volume). Our interest is in the elasticity spatial variation of the cell membrane and elasticity temporal variation while living cells are exposed to drugs. Also Quartz Crystal Microbalance (QCM) is used to study the viscoelasticity variation of cells during the cell cycle.

 

Atomic Force Microscopy of a Fibroblast
Quartz Crystal Microbalance of a Cellular Carpet


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